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Química computacional
Há diversos projetos em andamento no sentido de acelerar os códigos de química quântica usando GPUs habilitadas para CUDA, inclusive trabalhos em Gaussian e GAMESS. Os gráficos abaixo mostram resultados representativos, seguidos de links para software e relatórios técnicos sobre aceleração da química computacional usando CUDA.
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Cálculos diretos de campo autoconsistente (SCF) Ufimtsev e Martinez |
Two-Electron integral evaluation Koji Yasuda |
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Download Molecular Dynamics Software for CUDA
- Learn about GPU acceleration in VMD
- NAMD 2.7 Beta 2 including CUDA Acceleration
- HOOMD: Highly Optimized Object Oriented Molecular Dynamics
- OpenMM library for Accelerating Molecular Dynamics on GPUs
- GROMACS using OpenMM
- AMBER CUDA Port
- LAMMPS GPU Port
- TeraChem: First Quantum Chemistry Code Written Ground-up for CUDA GPUs
- ACE-MD
- MDGPU
- GPUGrid.net
- BigDFT : DFT (Density Functional Theory) Electronic Structure Code -- Paper PDF
- PC GAMESS on CUDA
- Todd Martinez work on Quantum Chemistry on GPUs
- Q-Chem on CUDA
- An implementation of the Smooth Particle-Mesh Ewald (PME) Method on GPU Hardware
- Two-Electron Integral Evaluation on the GPU
- Acceleration of Fragment MO (FMO) Method using CUDA
- NAMD and VMD Publications
- Molecular Dynamics on a GPU Grid
GPU Technology Conference Sessions
- Keynote: High-Throughput Science , Hanspeter Pfister, Harvard University
- GPU Accelerated Molecular Dynamics with AMBER, The Scripps Research Institute and San Diego Supercomputer Center
- GPU Accelerated Visualization and Analysis in VMD, University of Illinois at Champaign-Urbana
- Computational Biophysics and Long Range Electrostatics on GPUs, NVIDIA
- Volunteer Computing for GPUs: Petaflops for Free, UC Berkeley
- Harnessing the GPU for Surgical Training and Preoperative Planning, CSIRO
- GPU Accelerated Solvers for ODEs Describing Cardiac Membrane Equations, UC San Diego
- Reconstructing the Brain: Extracting Neural Circuitry with CUDA and MPI, Harvard University
- Unlocking Biologically-Inspired Computer Vision: a High-Throughput Approach, MIT
- A Large Scale Simulation of Lattice QCD with a GPU Cluster, National Taiwan University
- Overview of NVIDIA CUDA Support in AMBER - Lessons Learned, Capabilities Gained, Ross Walker, University of California San Diego, San Diego Supercomputing Center
- Harnessing GPU Speed to Accelerate LAMMPS Particle Simulation, Paul Crozier, Sandia National Laboratory
- Accelerating Molecular Modeling Applications with GPU Computing, John Stone, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana Champaign
- Tesla/CUDA Success stories
- Other Tesla Vertical Solutions
- CUDA Software Development Tools & Libraries
